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Phylogenetic tree of 732 isolates of A. pleuropneumoniae . Isolates containing the reference strains of serovars 2 ( n =199) and 6 ( n =60) were collapsed each in one cluster, and serovar 8 was collapsed in two clusters ( n =145 and 32). The allocation of serovars to the isolates is shown in red numbers 1–19. The cluster marked 9/11 contains isolates received as serovar 9 or 11. If isolates of a serovar are found in groups not containing the serovar reference strain, the groups are marked with an asterisk. Three groups of K2:O7 are marked with letters A–C. NT: non-typeable. Inner circle: colours indicate serovar; outer circle: colour indicates geographical origin. Serovar reference strains are indicated with small, round circles.

Journal: Microbial Genomics

Article Title: Serotyping of Actinobacillus pleuropneumoniae based on whole genome sequencing: validation of a bioinformatic tool

doi: 10.1099/mgen.0.001434

Figure Lengend Snippet: Phylogenetic tree of 732 isolates of A. pleuropneumoniae . Isolates containing the reference strains of serovars 2 ( n =199) and 6 ( n =60) were collapsed each in one cluster, and serovar 8 was collapsed in two clusters ( n =145 and 32). The allocation of serovars to the isolates is shown in red numbers 1–19. The cluster marked 9/11 contains isolates received as serovar 9 or 11. If isolates of a serovar are found in groups not containing the serovar reference strain, the groups are marked with an asterisk. Three groups of K2:O7 are marked with letters A–C. NT: non-typeable. Inner circle: colours indicate serovar; outer circle: colour indicates geographical origin. Serovar reference strains are indicated with small, round circles.

Article Snippet: Reference genomes for each of the 19 determined serovars of A. pleuropneumoniae were downloaded from National Center for Biotechnology Information (NCBI).

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